Pierre Monnin
Research Scientist at Centre Inria d'Université Côte d'Azur
Research within the Wimmics team
Teaching within EFELIA Côte d'Azur and Polytech Nice Sophia
Centre Inria d'Université Côte d'Azur
2004, route des Lucioles, BP 93
06902 Sophia Antipolis Cedex - France
Publications
Full list of publications available on Google Scholar and dblp
International journals (with program committee)
Claudia d’Amato, Louis Mahon, , Giorgos Stamou. Machine Learning and Knowledge Graphs: Existing Gaps and Future Research Challenges. Transactions on Graph Data and Knowledge, 2023, 1 (1), 8:1-8:35.
Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, , Catia Pesquita, Petr Škoda, Valentina Tamma. Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. Transactions on Graph Data and Knowledge, 2023, 1 (1), 5:1-5:33.
Nicolas Hubert, , Armelle Brun, Davy Monticolo. Sem@K: Is my knowledge graph embedding model semantic-aware?. Semantic Web, 2023, 14 (6), 1273-1309.
Jixiong Liu, Yoan Chabot, Raphaël Troncy, Viet-Phi Huynh, Thomas Labbé, . From Tabular Data to Knowledge Graphs: A Survey of Semantic Table Interpretation Tasks and Methods. Journal of Web Semantics, 2023.
, Chedy Raïssi, Amedeo Napoli, Adrien Coulet. Discovering alignment relations with Graph Convolutional Networks: a biomedical case study. Semantic Web, 2022, 13 (3), 379-398.
Emmanuel Bresso*, , Cédric Bousquet, François-Élie Calvier, Ndeye-Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet. Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining. BMC medical informatics and decision making, BioMed Central, 2021, 21 (1), 1-14.
* equal contributions
, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, Clément Jonquet, Amedeo Napoli, Adrien Coulet. PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison. BMC Bioinformatics, BioMed Central, 2019, 20 (S4).
International conferences (with program committee)
Stefano Bistarelli, Victor David, , Francesco Santini, Carlo Taticchi. Fast Computing of Dung Semantics in Acyclic Probabilistic Argumentation Frameworks. Thirty-Ninth AAAI Conference on Artificial Intelligence, AAAI 2025, February 25 - March 4, 2025, Philadelphia, PA, USA.
Nicolas Hubert, , Armelle Brun, Davy Monticolo. Treat Different Negatives Differently: Enriching Loss Functions with Domain and Range Constraints for Link Prediction. The Semantic Web - 21st International Conference, ESWC 2024, Hersonissos, Crete, Greece, May 26 - 30, 2024.
Nicolas Hubert, , Mathieu d'Aquin, Davy Monticolo, Armelle Brun. PyGraft: Configurable Generation of Synthetic Schemas and Knowledge Graphs at Your Fingertips. The Semantic Web - 21st International Conference, ESWC 2024, Hersonissos, Crete, Greece, May 26 - 30, 2024.
Rémi Felin, , Catherine Faron, Andrea Tettamanzi. An Algorithm Based on Grammatical Evolution for Discovering SHACL Constraints. Genetic Programming - 27th European Conference, EuroGP 2024, Held as Part of EvoStar 2024, Aberystwyth, Wales, United Kingdom, April 3-5, 2024.
Nicolas Hubert, Heiko Paulheim, , Armelle Brun, Davy Monticolo. Schema First! Learn Versatile Knowledge Graph Embeddings by Capturing Semantics with MASCHInE. Proceedings of the 12th International Conference on Knowledge Capture, K-CAP 2023, Pensacola, Florida, USA, December 5-7, 2023.
Lucas Jarnac, Miguel Couceiro, . Relevant Entity Selection: Knowledge Graph Bootstrapping via Zero-Shot Analogical Pruning. Proceedings of the 32nd ACM International Conference on Information & Knowledge Management (CIKM 2023), Birmingham, UK, October 21-25, 2023.
Nicolas Hubert, , Armelle Brun, Davy Monticolo. New Strategies for Learning Knowledge Graph Embeddings: the Recommendation Case. Knowledge Engineering and Knowledge Management - 23rd International Conference, EKAW 2022, Bolzano, Italy, September 26-29, 2022.
, Emmanuel Bresso, Miguel Couceiro, Malika Smaïl-Tabbone, Amedeo Napoli, Adrien Coulet. Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study. Proceedings of the First International Conference "Algebras, graphs and ordered sets", ALGOS 2020, Online (originally planned in Nancy, France), August 26-28, 2020.
, Mario Lezoche, Amedeo Napoli, Adrien Coulet. Using Formal Concept Analysis for Checking the Structure of an Ontology in LOD: The Example of DBpedia. Foundations of Intelligent Systems - 23rd International Symposium, ISMIS 2017, Warsaw, Poland, June 26-29, 2017.
International workshops (with program committee)
Nicolas Robert, , Catherine Faron. Semantically Enriched Datasets for Link Prediction: DB100k+, NELL-995+ and YAGO3-10+. 1st International Workshop on Advanced Neuro-Symbolic Applications Co-located with ECAI 2025, Bologna, Italy, October 2025.
Ndeye-Emilie Mbengue, Miguel Couceiro, Yves Lepage, . Which Pairs to Choose? Exploring Analogical Competency for Knowledge Graph Pruning. IARML 2025 - Workshop on the Interactions between Analogical Reasoning and Machine Learning at IJCAI 2025, Montreal, Canada, August 2025.
Mina Abd Nikkei Pour, Alsayed Algergawy, Eva Blomqvist, Patrice Buche, Jiaoyan Chen, Pedro Giesteira Cotovio, Adrien Coulet, Julien Cufi, Hang Dong, Daniel Faria, Lucas Ferraz, Sven Hertling, Yuan He, Ian Horrocks, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Felix Kraus, Patrick Lambrix, Huanyu Li, Ying Li, , Heiko Paulheim, Catia Pesquita, Abhisek Sharma, Pavel Shvaiko, Marta Silva, Guilherme Sousa, Cassia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou. Results of the Ontology Alignment Evaluation Initiative 2024. Proceedings of the 19th International Workshop on Ontology Matching co-located with the 23rd International Semantic Web Conference (ISWC 2024), Baltimore, USA, November 11, 2024.
Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Patrick Lambrix, Huanyu Li, Ying Li, , Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou. Results of the Ontology Alignment Evaluation Initiative 2023. Proceedings of the 18th International Workshop on Ontology Matching co-located with the 22nd International Semantic Web Conference (ISWC 2023), Athens, Greece, November 7, 2023.
Lucas Jarnac, . Wikidata to Bootstrap an Enterprise Knowledge Graph: How to Stay on Topic?. Proceedings of the 3rd Wikidata Workshop 2022 co-located with the 21st International Semantic Web Conference (ISWC2022), Virtual Event, Hanghzou, China, October 2022.
Nicolas Hubert, , Armelle Brun, Davy Monticolo. Knowledge Graph Embeddings for Link Prediction: Beware of Semantics! Proceedings of the Workshop on Deep Learning for Knowledge Graphs (DL4KG2022) co-located with the 21st International Semantic Web Conference (ISWC 2022), Virtual Conference, online, October 24, 2022.
, Adrien Coulet. Matching Pharmacogenomic Knowledge: Particularities, Results, and Perspectives. Proceedings of the 17th International Workshop on Ontology Matching co-located with the 21st International Semantic Web Conference (ISWC 2022), Hangzhou, China, October 23, 2022, moved online.
, Miguel Couceiro. Interactions Between Knowledge Graph-Related Tasks and Analogical Reasoning: A Discussion. Workshop Proceedings of the 30th International Conference on Case-Based Reasoning co-located with the 30th International Conference on Case-Based Reasoning (ICCBR 2022), Nancy (France), September 12-15th, 2022.
Viet-Phi Huynh, Jixiong Liu, Yoan Chabot, Frédéric Deuzé, Thomas Labbé, , Raphaël Troncy. DAGOBAH: Table and Graph Contexts for Efficient Semantic Annotation of Tabular Data. Proceedings of the Semantic Web Challenge on Tabular Data to Knowledge Graph Matching (SemTab 2021) co-located with the 20th International Semantic Web Conference (ISWC 2021), Virtual conference, October 27, 2021.
Viet-Phi Huynh, Jixiong Liu, Yoan Chabot, Thomas Labbé, , Raphaël Troncy. DAGOBAH: Enhanced Scoring Algorithms for Scalable Annotations of Tabular Data. Proceedings of the Semantic Web Challenge on Tabular Data to Knowledge Graph Matching (SemTab 2020) co-located with the 19th International Semantic Web Conference (ISWC 2020), Virtual conference (originally planned to be in Athens, Greece), November 5, 2020.
, Chedy Raïssi, Amedeo Napoli, Adrien Coulet. Knowledge Reconciliation with Graph Convolutional Networks: Preliminary Results. Proceedings of the Workshop on Deep Learning for Knowledge Graphs (DL4KG2019) Co-located with the 16th Extended Semantic Web Conference 2019 (ESWC 2019), Portoroz, Slovenia, June 2, 2019.
. Discovering and Comparing Relational Knowledge, the Example of Pharmacogenomics. Proceedings of the EKAW Doctoral Consortium 2018 co-located with the 21st International Conference on Knowledge Engineering and Knowledge Management (EKAW 2018), Nancy, France, November 13, 2018.
, Amedeo Napoli, Adrien Coulet. Combining Concept Annotation and Pattern Structures for Guiding Ontology Mapping. Proceedings of the 6th International Workshop ``What can FCA do for Artificial Intelligence?'' co-located with International Joint Conference on Artificial Intelligence and European Conference on Artificial Intelligence (IJCAI/ECAI 2018), Stockholm, Sweden, July 13, 2018.
, Clément Jonquet, Joël Legrand, Amedeo Napoli, Adrien Coulet. PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units. Methods, tools & platforms for Personalized Medicine in the Big Data Era, NETTAB 2017, Palermo, Italy, October 16-18, 2017.
Posters, demos & short papers in international conferences (with program committee)
, Cherif-Hassan Nousradine, Lucas Jarnac, Laurel Zuckerman, Miguel Couceiro. KGPrune: a Web Application to Extract Subgraphs of Interest from Wikidata with Analogical Pruning. ECAI 2024 - 27th European Conference on Artificial Intelligence, October 19-24, 2024, Santiago de Compostela, Spain.
Rémi Felin, , Catherine Faron, Andrea Tettamanzi. RDFminer: an Interactive Tool for the Evolutionary Discovery of SHACL Shapes. The Semantic Web: ESWC 2024 Satellite Events, Hersonissos, Crete, Greece, May 26 - May 30, 2024.
Christophe Sarthou-Camy, Guillaume Jourdain, Yoan Chabot, , Frédéric Deuzé, Viet-Phi Huynh, Jixiong Liu, Thomas Labbé, Raphaël Troncy. DAGOBAH UI: A New Hope for Semantic Table Interpretation. (demonstration) The Semantic Web: ESWC 2022 Satellite Events, Hersonissos, Crete, Greece, May 29 - June 2, 2022.
Yoan Chabot, , Frédéric Deuzé, Viet-Phi Huynh, Thomas Labbé, Jixiong Liu, Raphaël Troncy. A Framework for Automatically Interpreting Tabular Data at Orange. (extended industry abstract) Proceedings of the ISWC 2021 Posters, Demos and Industry Tracks: From Novel Ideas to Industrial Practice co-located with 20th International Semantic Web Conference (ISWC 2021), Virtual Conference, October 24-28, 2021.
, Miguel Couceiro, Amedeo Napoli, Adrien Coulet. Knowledge-Based Matching of n-ary Tuples. (short paper) Ontologies and Concepts in Mind and Machine - 25th International Conference on Conceptual Structures, ICCS 2020, Bolzano, Italy, September 18–20, 2020.
Abstracts of oral presentations in international conferences (with program committee)
François-Élie Calvier, , Miguel Boland, Patryk Jarnot, Emmanuel Bresso, Malika Smaïl-Tabbone, Adrien Coulet, Cedric Bousquet. Providing Molecular Characterization for Unexplained Adverse Drug Reactions. Podium Abstract. MedInfo 2019, Lyon, France, August 26-30, 2019.
Abstracts of oral presentations in international workshops (with program committee)
Lucas Jarnac, . Wikidata to Bootstrap an Enterprise Knowledge Graph: How to Stay on Topic?. Presented at Wiki Workshop (10th edition), Virtual Event, May 11, 2023.
, Amedeo Napoli, Adrien Coulet. Data-Interlinking: the Seed of Knowledge Reconciliation in Pharmacogenomics. Presented at the Workshop Symbolic methods for data-interlinking co-located with the 21st International Conference on Knowledge Engineering and Knowledge Management (EKAW 2018), Nancy, France, November 12, 2018.
National conferences (with program committee)
Rémi Felin, , Catherine Faron, Andrea Tettamanzi. Extraction probabiliste de formes SHACL à l’aide d’algorithmes évolutionnaires. Extraction et Gestion des Connaissances, EGC 2024, Dijon, France, January 22-26, 2024.
Viet-Phi Huynh, Jixiong Liu, Yoan Chabot, Frédéric Deuzé, Thomas Labbé, , Raphaël Troncy. DAGOBAH: Annotation sémantique de données tabulaires par comparaison du contexte des tables et d'un graphe de connaissances. IC 2022 : 33es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 33rd French Knowledge Engineering Conference), Saint-Etienne, France, June 29 - July 1, 2022.
National workshops (with program committee)
, Chedy Raïssi, Amedeo Napoli, Adrien Coulet. Combiner plongements de graphes et clustering pour l'alignement de connaissances pharmacogénomiques. Santé & IA 2022, Saint-Etienne, France, June 28, 2022.
Posters in national conferences (with program committee)
, Joël Legrand, Adrien Coulet. PGxCorpus and PGxLOD: two shared resources for knowledge management in pharmacogenomics. JOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Rennes, France, July 05-08, 2022.
, Amedeo Napoli, Adrien Coulet. Discovering Subsumption Axioms with Concept Annotation. BDA 2017 - 33ème Conférence sur la Gestion de Données — Principes, Technologies et Applications, Nancy, France, November 14-17, 2017.
Abstracts of oral presentations in national conferences (with program committee)
Nicolas Hubert, , Mathieu d’Aquin, Davy Monticolo, Armelle Brun. PyGraft: un outil Python pour la génération de schémas et graphes de connaissance synthétiques. IC 2024 : 35es Journées francophones d’Ingénierie des Connaissances, La Rochelle, France, July 3-5, 2024.
Nicolas Hubert, , Armelle Brun, Davy Monticolo. Enrichissement de fonctions de perte avec contraintes de domaine et co-domaine pour la prédiction de liens dans les graphes de connaissance. Conférence Nationale en Intelligence Artificielle, CNIA 2024, Annual French AI Conference, La Rochelle, France, July 3-5, 2024.
Lucas Jarnac, Miguel Couceiro, . Relevant Entity Selection: Knowledge Graph Bootstrapping via Zero-Shot Analogical Pruning. 32èmes Rencontres Francophones sur la Logique Floue et ses Applications (LFA 2023), Bourges, France, November 9-10, 2023.
Emmanuel Bresso*, , Cédric Bousquet, François-Élie Calvier, Ndeye-Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet. Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining. JOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Rennes, France, July 05-08, 2022.
* equal contributions
Abstracts of oral presentations in national workshops (with program committee)
Yoan Chabot, , Thomas Labbé. DAGOBAH : Des outils pour l'interprétation automatique de données tabulaires. SemWeb.Pro 2021, Remote, December 9, 2021.
Thesis
. Matching and mining in knowledge graphs of the Web of data - Applications in pharmacogenomics. Université de Lorraine, 2020.
Editorships
Miguel Couceiro, Esteban Marquer, , Pierre-Alexandre Murena, eds. Special issue on analogies: from mathematical foundations to applications and interactions with ML and AI. Annals of Mathematics and Artificial Intelligence. Dec. 2024.
Miguel Couceiro, Erkko Lehtonen, , eds. Special issue to the memory of Maurice Pouzet. Vol. 23 (2). Discrete Mathematics and Theoretical Computer Science. 2023.
Ulrike Sattler, Aidan Hogan, Maria Keet, Valentina Presutti, João Paulo A. Almeida, Hideaki Takeda, , Giuseppe Pirrò, and Claudia d'Amato, eds. The Semantic Web - ISWC 2022 - 21st International Semantic Web Conference, ISWC 2022, Virtual Event, October 23-27, 2022.
Miguel Couceiro, , Amedeo Napoli, eds. Proceedings of the First International Conference "Algebras, graphs and ordered sets", ALGOS 2020, Online (originally planned in Nancy, France), August 26-28, 2020.
Popularization articles
, Cherif-Hassan Nousradine, Lucas Jarnac, Laurel Zuckerman, Miguel Couceiro. KGPrune : une application Web pour extraire des sous-graphes d’intérêt de Wikidata par élagage analogique. 1024 - Bulletin de la Société Informatique de France 24 (November 2024). Société Informatique de France.
, Adrien Coulet. Étudier les mécanismes des effets indésirables des médicaments avec l’IA explicable : expériences avec la fouille de graphes de connaissances. Bulletin de l'AFIA (Association Française pour l'Intelligence Artificielle) 116 (May 2022).
, Adrien Coulet. Projet ANR (2016-2021) "PractiKPharma" : extraction, comparaison et découverte de connaissances en pharmacogénomique. 1024 - Bulletin de la Société Informatique de France 19 (April 2022). Société Informatique de France.
Popularization oral presentations
. Using Wikidata to bootstrap a new knowledge graph: selecting relevant entities using analogical pruning. Wikidata Modelling Days 2023, Virtual Event, November 30, December 1-2, 2023.